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1

Non-homogeneous dynamic Bayesian networks with Bayesian regularization for inferring gene regulatory networks with gradually time-varying structure

Dondelinger, Frank, Lèbre, Sophie, Husmeier, Dirk

Journal:

Machine Learning

Year:

2013

Language:

english

File:

PDF, 1.61 MB

english, 2013

2

Non-homogeneous dynamic Bayesian networks for

Marco Grzegorczyk, Dirk Husmeier

Journal:

Machine Learning

Year:

2011

Language:

english

File:

PDF, 3.09 MB

english, 2011

3

Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods

Ali Faisal, Frank Dondelinger, Dirk Husmeier, Colin M. Beale

Journal:

Ecological Informatics

Year:

2010

Language:

english

File:

PDF, 826 KB

english, 2010

4

Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move

Marco Grzegorczyk, Dirk Husmeier

Journal:

Machine Learning

Year:

2008

Language:

english

File:

PDF, 4.77 MB

english, 2008

5

A Non-Homogeneous Dynamic Bayesian Network with Sequentially Coupled Interaction Parameters for Applications in Systems and Synthetic Biology

Grzegorczyk, Marco, Husmeier, Dirk

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.96 MB

english, 2012

6

Bayesian approaches to Gaussian mixture modeling

Roberts, S.J., Husmeier, D., Rezek, I., Penny, W.

Journal:

IEEE Transactions on Pattern Analysis and Machine Intelligence

Year:

1998

Language:

english

File:

PDF, 1008 KB

english, 1998

7

[Advanced Information and Knowledge Processing] Probabilistic Modeling in Bioinformatics and Medical Informatics ||

Husmeier, Dirk, Dybowski, Richard, Roberts, Stephen

Year:

2005

Language:

english

File:

PDF, 5.09 MB

english, 2005

8

Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge

Werhli, Adriano V, Husmeier, Dirk

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.31 MB

english, 2007

9

Learning non-stationary conditional probability distributions

Journal:

Neural Networks

Year:

2000

Language:

english

File:

PDF, 97 KB

english, 2000

10

Predicting Conditional Probability Densities of Stationary Stochastic Time Series

Dirk Husmeier, John G. Taylor

Journal:

Neural Networks

Year:

1997

Language:

english

File:

PDF, 3.24 MB

english, 1997

11

Neural Networks for Predicting Conditional Probability Densities: Improved Training Scheme Combining EM and RVFL

Dirk Husmeier, John G. Taylor

Journal:

Neural Networks

Year:

1998

Language:

english

File:

PDF, 1.11 MB

english, 1998

12

An empirical evaluation of Bayesian sampling with hybrid Monte Carlo for training neural network classifiers

D. Husmeier, W.D. Penny, S.J. Roberts

Journal:

Neural Networks

Year:

1999

Language:

english

File:

PDF, 884 KB

english, 1999

13

Modelling non-stationary dynamic gene regulatory processes with the BGM model

Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer

Journal:

Computational Statistics

Year:

2011

Language:

english

File:

PDF, 971 KB

english, 2011

14

Segregation and Recombination of a Multipartite Mitochondrial DNA in Populations of the Potato Cyst NematodeGlobodera pallida

Miles R. Armstrong, Dirk Husmeier, Mark S. Phillips, Vivian C. Blok

Journal:

Journal of Molecular Evolution

Year:

2007

Language:

english

File:

PDF, 286 KB

english, 2007

15

Dynamic Bayesian networks in molecular plant science: inferring gene regulatory networks from multiple gene expression time series

Frank Dondelinger, Dirk Husmeier, Sophie Lèbre

Journal:

Year:

2012

Language:

english

File:

PDF, 632 KB

english, 2012

16

Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model

Wolfgang P. Lehrach, Dirk Husmeier

Journal:

Journal of the Royal Statistical Society: Series C (Applied Statistics)

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

17

Structural fluctuations and conformational entropy in proteins: entropy balance in an intramolecular reaction in methemoglobin

Heinz-Jürgen Steinhoff, Jürgen Schlitter, Albrecht Redhardt, Dirk Husmeier, Norbert Zander

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1992

Language:

english

File:

PDF, 1.03 MB

english, 1992

18

Reinforcement learning in a rule-based navigator for robotic manipulators

Kaspar Althoefer, Bart Krekelberg, Dirk Husmeier, Lakmal Seneviratne

Journal:

Year:

2001

Language:

english

File:

PDF, 426 KB

english, 2001

19

Hierarchical Bayesian models in ecology: Reconstructing species interaction networks from non-homogeneous species abundance data

Aderhold, Andrej, Husmeier, Dirk, Lennon, Jack J., Beale, Colin M., Smith, V. Anne

Journal:

Ecological Informatics

Year:

2012

Language:

english

File:

PDF, 964 KB

english, 2012

20

[Advanced Information and Knowledge Processing] Probabilistic Modeling in Bioinformatics and Medical Informatics || Introduction to Statistical Phylogenetics

Husmeier, Dirk, Dybowski, Richard, Roberts, Stephen

Year:

2005

Language:

english

File:

PDF, 621 KB

english, 2005

21

GENE REGULATORY NETWORK RECONSTRUCTION BY BAYESIAN INTEGRATION OF PRIOR KNOWLEDGE AND/OR DIFFERENT EXPERIMENTAL CONDITIONS

WERHLI, ADRIANO V., HUSMEIER, DIRK

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 696 KB

english, 2008

22

Regularization of non-homogeneous dynamic Bayesian networks with global information-coupling based on hierarchical Bayesian models

Marco Grzegorczyk, Dirk Husmeier

Journal:

Machine Learning

Year:

2013

Language:

english

File:

PDF, 1.90 MB

english, 2013

23

[American Institute of Aeronautics and Astronautics 43rd AIAA Aerospace Sciences Meeting and Exhibit - Reno, Nevada ()] 43rd AIAA Aerospace Sciences Meeting and Exhibit - Investigation of Transition of Supersonic Boundary Layers at Mach 3 Using DNS

Husmeier, Frank, Mayer, Christian, Fasel, Hermann

Year:

2005

File:

PDF, 1.05 MB

2005

24

[American Institute of Aeronautics and Astronautics 18th AIAA Computational Fluid Dynamics Conference - Miami, Florida ()] 18th AIAA Computational Fluid Dynamics Conference - Numerical Investigations of Hypersonic Boundary Layer Transition over Circular Cones

Husmeier, Frank, Fasel, Hermann

Year:

2007

Language:

english

File:

PDF, 2.52 MB

english, 2007

25

Reduced injector losses and improved spray pattern

Dr. Frank Husmeier

Journal:

MTZ worldwide eMagazine

Year:

2013

Language:

english

File:

PDF, 846 KB

english, 2013

26

Schwingfestigkeitsmessungen an Aluminiumgussteilen für den Motorenbau

Dipl.-Ing. Friedrich Husmeier…

Journal:

MTZ - Motortechnische Zeitschrift

Year:

2007

Language:

german

File:

PDF, 771 KB

german, 2007

27

A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana

Catherine F Higham,Dirk Husmeier

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 794 KB

english, 2013

28

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

Milne, I., Lindner, D., Bayer, M., Husmeier, D., McGuire, G., Marshall, D. F., Wright, F.

Journal:

Year:

2009

Language:

english

File:

PDF, 180 KB

english, 2009

29

[Advanced Information and Knowledge Processing] Probabilistic Modeling in Bioinformatics and Medical Informatics || Software for Probability Models in Medical Informatics

Husmeier, Dirk, Dybowski, Richard, Roberts, Stephen

Year:

2005

Language:

english

File:

PDF, 241 KB

english, 2005

30

System Relaxation and Thermodynamic Integration

Schlitter, Jürgen, Husmeier, Dirk

Journal:

Molecular Simulation

Year:

1992

Language:

english

File:

PDF, 672 KB

english, 1992

31

Schwingfestigkeitsmessungen an Aluminiumgussteilen für den Motorenbau

Dipl.-Ing. Friedrich Husmeier…

Journal:

ATZ - Automobiltechnische Zeitschrift

Year:

2007

Language:

german

File:

PDF, 918 KB

german, 2007

32

Reduzierte Strömungsverluste im Injektor und besseres Strahlbild

Dr. Frank Husmeier

Journal:

MTZ - Motortechnische Zeitschrift

Year:

2013

Language:

german

File:

PDF, 1.46 MB

german, 2013

33

Detection of Recombination in DNA Multiple Alignments with Hidden Markov Models

Husmeier, Dirk, Wright, Frank

Journal:

Journal of Computational Biology

Year:

2001

Language:

english

File:

PDF, 560 KB

english, 2001

34

[Advanced Information and Knowledge Processing] Probabilistic Modeling in Bioinformatics and Medical Informatics || Bayes Consistent Classification of EEG Data by Approximate Marginalization

Husmeier, Dirk, Dybowski, Richard, Roberts, Stephen

Year:

2005

Language:

english

File:

PDF, 388 KB

english, 2005

35

[IEE 9th International Conference on Artificial Neural Networks: ICANN '99 - Edinburgh, UK (7-10 Sept. 1999)] 9th International Conference on Artificial Neural Networks: ICANN '99 - Regularisation of RBF-networks with the Bayesian evidence scheme

Year:

1999

Language:

english

File:

PDF, 431 KB

english, 1999

36

Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks

Werhli, A. V., Grzegorczyk, M., Husmeier, D.

Journal:

Year:

2006

Language:

english

File:

PDF, 192 KB

english, 2006

37

Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks

Journal:

Year:

2003

Language:

english

File:

PDF, 182 KB

english, 2003

38

[Advanced Information and Knowledge Processing] Probabilistic Modeling in Bioinformatics and Medical Informatics || Bayesian Analysis of Population Pharmacokinetic/Pharmacodynamic Models

Husmeier, Dirk, Dybowski, Richard, Roberts, Stephen

Year:

2005

Language:

english

File:

PDF, 282 KB

english, 2005

39

Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments

Husmeier, Dirk, Mantzaris, Alexander V.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 847 KB

english, 2008

40

A Bayesian approach to discriminate between alternative DNA sequence segmentations

Husmeier, D., Wright, F.

Journal:

Year:

2002

Language:

english

File:

PDF, 152 KB

english, 2002

41

Statistical inference of regulatory networks for circadian regulation

Aderhold, Andrej, Husmeier, Dirk, Grzegorczyk, Marco

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 6.47 MB

english, 2014

42

A Heuristic Bayesian Method for Segmenting DNA Sequence Alignments and Detecting Evidence for Recombination and Gene Conversion

Kedzierska, Anna, Husmeier, Dirk

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 584 KB

english, 2006

43

Inferring bi-directional interactions between circadian clock genes and metabolism with model ensembles

Grzegorczyk, Marco, Aderhold, Andrej, Husmeier, Dirk

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

44

Detecting recombination with MCMC

Husmeier, D., McGuire, G.

Journal:

Year:

2002

Language:

english

File:

PDF, 200 KB

english, 2002

45

Modelling Transcriptional Regulation with a Mixture of Factor Analyzers and Variational Bayesian Expectation Maximization

Lin, Kuang, Husmeier, Dirk

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2008

Language:

english

File:

PDF, 1.50 MB

english, 2008

46

The Bayesian Evidence Scheme for Regularizing Probability-Density Estimating Neural Networks

Journal:

Neural Computation

Year:

2000

File:

PDF, 1.31 MB

2000

47

Detecting Recombination in 4-Taxa DNA Sequence Alignments with Bayesian Hidden Markov Models and Markov Chain Monte Carlo

Journal:

Molecular Biology and Evolution

Year:

2003

Language:

english

File:

PDF, 831 KB

english, 2003

48

Detecting interspecific recombination with a pruned probabilistic divergence measure

Husmeier, D., Wright, F., Milne, I.

Journal:

Year:

2005

Language:

english

File:

PDF, 246 KB

english, 2005

49

Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler

Grzegorczyk, M., Husmeier, D., Edwards, K. D., Ghazal, P., Millar, A. J.

Journal:

Year:

2008

Language:

english

File:

PDF, 208 KB

english, 2008

50

Probabilistic divergence measures for detecting interspecies recombination

Husmeier, D., Wright, F.

Journal:

Year:

2001

Language:

english

File:

PDF, 278 KB

english, 2001